Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID112433_PtRNAdb
Plant SourceSorghum bicolor     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDchl.trna29
tRNA locuschl : 21058 - 20988 (-)
IsoacceptorCys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Cys isoacceptor in Sorghum_bicolor plant by clicking on the isoacceptor]

IsodecoderGCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCA isodecoder in Sorghum_bicolor plant by clicking on the isodecoder]

tRNA Sequence
GGCGGCATGGCCAAGTGGTAAGGCAGGGGACTGCAAATCCTTTACCCCCAGTTCAAATCTGGGTGCCGCCT
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GATTCAAGATAAAAGAAAAAAAGGTTTTAGTAATTTTAGTAATTAGTAAAAAAATGTGGATGAATACTTGCTCTTTTCTCGATTTTAGATCGGATTTTTT
Downstream sequence (upto 100nt)
GATCAATAAAATACTTAGGATTATAGTACTGATCAAACTCGACAAATTCGTACCCCCCTAAGTTGGGGCACGAGAGTAACTAGGTTTGGCGATACTGGAT
Mature tRNA
GGCGGCAUGGCCAAGUGGUAAGGCAGGGGACUGCAAAUCCUUUACCCCCAGUUCAAAUCUGGGUGCCGCCU
HMM Score36.50
Secondary structure Score30.70