Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID11232_PtRNAdb
Plant SourceArachis monticola     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B03.trna31
tRNA locuschr-B03 : 31739707 - 31739779 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Arachis_monticola plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Arachis_monticola plant by clicking on the isodecoder]

tRNA Sequence
GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATTTGAAAGTCGCGTGTTCGATCCACGCTCACCGCA
tRNA secondary structure
>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<.
Upstream sequence (upto 100nt)
TAAAAACCCAAAGTCAGGATACTCATTTGAATGTTTGATAGATGATTCTGGGGGCACCTACTTTATTTTATTTGTTTAATATGTTAAATAAATTCTATAA
Downstream sequence (upto 100nt)
TTAATCAACTTCCAAAACGTGCTATATATTATTTGTAATCTGCATAATTAGCAAGTTCACAATACGTTTTGTTTTTAACTCATTCAAAGCTTAGGGATGA
Mature tRNA
GCGGGGAUAGCUCAGUUGGGAGAGCGUCAGACUGAAGAUUUGAAAGUCGCGUGUUCGAUCCACGCUCACCGCA
HMM Score48.70
Secondary structure Score19.50