Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID112292_PtRNAdb
Plant SourceSetaria italica     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDPt.trna23
tRNA locusPt : 99750 - 99679 (-)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Setaria_italica plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Setaria_italica plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCTACTTGGGGAG
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACGCATATTGTTCACGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTCGAATCTCCCCTTGT
Downstream sequence (upto 100nt)
ATTTGATTCATTCTTTAATGTAAGAATAAAGAATTGAATTAAAAGGCTTGCTTTGACCCTTAGGAGTAGGTAACCCGTTCGCTATCCTTGTTTCTATTGC
Mature tRNA
UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCGUAGGUUCGAAUCCUACUUGGGGAG
HMM Score44.80
Secondary structure Score23.40