Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID112167_PtRNAdb
Plant SourceRosa chinensis     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna32
tRNA locuschl : 7957 - 7853 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Rosa_chinensis plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Rosa_chinensis plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGTAATGATAGTATCTTGTACCTG
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<.....>.......<<<<.<<<.
Upstream sequence (upto 100nt)
CGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCTCGG
Downstream sequence (upto 100nt)
AACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAGGA
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCUCUUGCAAGGCGGUAAUGAUAGUAUCUUGUACCUG
Intron Sequence
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCC
Intron Position38-77
Infernal Score16.3
HMM Score30.00
Secondary structure Score-13.70