Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID112109_PtRNAdb
Plant SourceRaphanus sativus     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna11
tRNA locuschl : 102628 - 102732 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Raphanus_sativus plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Raphanus_sativus plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGTAATGATAGTATCTTGTACCTG
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<.....>.......<<<<.<<<.
Upstream sequence (upto 100nt)
CGGGCGAGGTCTCTGGTTCAAATCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAATATAAGAAGGATCTGACTCCTTCATGCATGCTCCACTTGGCTCGG
Downstream sequence (upto 100nt)
AACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAAAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAGGA
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCUCUUGCAAGGCGGUAAUGAUAGUAUCUUGUACCUG
Intron Sequence
ATTGGGTCGTTGCGATTACGGGTTGGGTGTCTAATTGTCC
Intron Position38-77
Infernal Score16.3
HMM Score25.30
Secondary structure Score-9.00