Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID112104_PtRNAdb
Plant SourceQuercus lobata     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna6
tRNA locuschl : 54022 - 54090 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Quercus_lobata plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Quercus_lobata plant by clicking on the isodecoder]

tRNA Sequence
GTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAGTTCAAATCNTAAGACT
tRNA secondary structure
>>>..>...>>>>........<<<<.>>>>>.......<<<<<.........>.......<.<..<<<.
Upstream sequence (upto 100nt)
CCAAGAAATTACAGGGTCTGGATAAAGTAAGACTTTTTTGTCTTTTTAATTGACATAAACTCAAGTTATCTATTAAAATAAGGACGATGCACGGATAATG
Downstream sequence (upto 100nt)
TTTTTTGTCTTTTTAATTGACATAAACTCAAGTTATCTATTAAAATAAGGACGATGCACGGATAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGGACT
Mature tRNA
GUCGGGAUAGCUCAGCUGGUAGAGCAGAGGACUGAAAAUCCUCGUGUCACCAGUUCAAAUCNUAAGACU
HMM Score25.90
Secondary structure Score-3.30