Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111979_PtRNAdb
Plant SourcePhyscomitrella patens     |     Cryptogamae -->Bryophyte
Genome levelPlastid
tRNA IDchl.trna14
tRNA locuschl : 88973 - 89076 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Physcomitrella_patens plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Physcomitrella_patens plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCGCCGCCCTTGCAAGGCGGTAATGATAGTATCTTTTACCT
tRNA secondary structure
>>.>>.>..>>>>........<<<<.>>>>>...............................................<<<<<....>>>...<<<<.<<.<<.
Upstream sequence (upto 100nt)
ATATGGTGCGAGAATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATAGCCCAGCAGCGCCAAGGGAAATCATAAAAACACGTTCATGCATGTA
Downstream sequence (upto 100nt)
AAACCGGTGGCTAACTTTTTTCCAGGAATGGAAAAGAGGACCGGAACATGCCACTGAAAAACTTTACTGAGACAAAGATGGGCTGTCGAAAGTGTAGAGA
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCGCCGCCCUUGCAAGGCGGUAAUGAUAGUAUCUUUUACCU
Intron Sequence
ATTGGGTCGTTGCGCTTACGGGTTGGATGCCTAATTGTCT
Intron Position38-77
Infernal Score22.5
HMM Score30.80
Secondary structure Score-8.30