Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111758_PtRNAdb
Plant SourceOryza meridionalis     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDchl.trna1
tRNA locuschl : 12336 - 12406 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Oryza_meridionalis plant by clicking on the isoacceptor]

IsodecoderGCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCC isodecoder in Oryza_meridionalis plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGAGCGTAGTTCAATGGTAAAACATCTCCTTGCCAAGGAGAAGATACGGGTTCGATTCCCGCCGCTCGCC
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
ATTAAATTAATAAAAAGAAAACTCAAATAGAAAATGAAACGGTCGACCCAGACATAGACGGTCGACCCAGGCGGATATACCCTATAAAATATAGGACGTA
Downstream sequence (upto 100nt)
AGCTTAATTTAGTAAGGTACTATGATAAAAAATTTAGTCTACTTTTATTAAAGTAATAGGTGTTAGTCTAGTACCGTACCCCTTTACTATCTTAGCCCCC
Mature tRNA
GCGAGCGUAGUUCAAUGGUAAAACAUCUCCUUGCCAAGGAGAAGAUACGGGUUCGAUUCCCGCCGCUCGCC
HMM Score44.00
Secondary structure Score14.60