Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID11163_PtRNAdb
Plant SourceArachis monticola     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B03.trna156
tRNA locuschr-B03 : 114968606 - 114968413 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Arachis_monticola plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Arachis_monticola plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGCTCAGTTGGTGGGGAGAGCGCAGCATCCTGCTGCTTGTGGTGTGTCTTGTTGGGCGCTCCAAGCTTCGGTCCGTGTCACACATTGCGCACCAAGCTTCCCTGGCCGTGTCAATGTTGCGCTCAGCTCTCCTTGAGAGCGCAGCATCCATGCTTCAAGGGTGAGGCTCTAGGTTCGAATCCTTGGAGAAGCA
tRNA secondary structure
>>>>>>............<<<<....>>>>..................................................................................................................................<<<<.....>.>>>.......<<<.<.....<<.
Upstream sequence (upto 100nt)
TGCTCCCAGGGCAAGGCTTGGTTCATGGGGAGAGCACAGCATTGGTGCTCATTTCCTTGCCCCTTTGTAACGTGACAAGCTTGGTGGACAGCATCAGGGG
Downstream sequence (upto 100nt)
TTGCTGGCCAATTTCTTTGCAAGGAGCGCTTCTCTCCTTCCCTTAACACATGAGCTCGAACCTTGTGGAAAGCATTTCAGCCAATTTTGGCTCATTTCCT
Mature tRNA
GCGCUCAGUUGGUGGGGAGAGCGCAGCAUCCUGCUGGGGUGAGGCUCUAGGUUCGAAUCCUUGGAGAAGCA
Intron Sequence
CTTGTGGTGTGTCTTGTTGGGCGCTCCAAGCTTCGGTCCGTGTCACACATTGCGCACCAAGCTTCCCTGGCCGTGTCAATGTTGCGCTCAGCTCTCCTTGAGAGCGCAGCATCCATGCTTCAA
Intron Position37-159
Infernal Score22.8
HMM Score10.10
Secondary structure Score12.70