Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111614_PtRNAdb
Plant SourceOryza barthii     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDchl.trna12
tRNA locuschl : 94274 - 94378 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Oryza_barthii plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Oryza_barthii plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGTAATGGTAGTATCTTGTACCTG
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<....>>......<<<<<.<<<.
Upstream sequence (upto 100nt)
CGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAGGGAAAAGAATAGAAGAAGCATCTGACTCTTTCATGCATACTCCACTTGGCTCGG
Downstream sequence (upto 100nt)
AACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACTGAAACATGCCACTGAAAGACTCTACTGAGACAAAAAGATGGGCTGTCAAAAAGGTAGAG
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCUCUUGCAAGGCGGUAAUGGUAGUAUCUUGUACCUG
Intron Sequence
ATTGGGTCGTTGCGATTACGGGTTGGCTGTCTAATTGTCC
Intron Position38-77
Infernal Score17.0
HMM Score25.50
Secondary structure Score-8.50