Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111479_PtRNAdb
Plant SourceMusa balbisiana     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDchl.trna10
tRNA locuschl : 107486 - 107573 (+)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Musa_balbisiana plant by clicking on the isoacceptor]

IsodecoderGAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAT isodecoder in Musa_balbisiana plant by clicking on the isodecoder]

tRNA Sequence
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATATGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<..>>>>.......................<<<<...>>>>><<<<<..>>>..<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCCCTCCCGTGTGGCGACATGGGGACGTAAAAAGGAAAGAGAGGGATGGGTTTTTCTCGCTTTTGGCATAGCAGGCCTCCCACTGGGAGGCCCACACGAC
Downstream sequence (upto 100nt)
ATGTGCTCATCAGCGCCTGACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATCGGAGTTTGAAACCAAACTTCTC
Mature tRNA
GGGCUAUUAGCUCAGUGGUAGAGCGCGCCCCUGAUAUGGGCUGUGAGGGCUCUCAGCCACAUGGAUAGUUCA
Intron Sequence
ATTGCGTCGTTGTGCC
Intron Position37-52
Infernal Score16.4
HMM Score0.00
Secondary structure Score16.40