Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111340_PtRNAdb
Plant SourceLinum usitatissimum     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna27
tRNA locuschl : 31324 - 31253 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Linum_usitatissimum plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Linum_usitatissimum plant by clicking on the isodecoder]

tRNA Sequence
GCGGAGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCA
tRNA secondary structure
>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGGTATTGTTTTGTACGGATATGGTAGAGGGGCGCATGCAATCCTTATTTATCCAGCAATCCTTATTTATCCATTAGTTCCTAGTTGTTCTATTCATCAG
Downstream sequence (upto 100nt)
CCATTTTTTTACATTTCTAATTACAAAACAAAATTAGGGTTTTCCAATGAGTAACCTAGTAATTTACTACCTTTTTGGGGAGGATGGCAGGAAAGAAAAA
Mature tRNA
GCGGAGUAGAGCAGCUUGGUAGCUCGCAAGGCUCAUAACCUUGAGGUCACGGGUUCAAAUCCCGUCUCCGCA
HMM Score26.70
Secondary structure Score34.80