Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111323_PtRNAdb
Plant SourceLinum usitatissimum     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna11
tRNA locuschl : 98239 - 98643 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Linum_usitatissimum plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Linum_usitatissimum plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATGCGGAAAAATCCATGGACCGACCCCATCGTCTCCA
tRNA secondary structure
>>>>>>...>>>>........<<<<.>>>>....................................................................................................................................................................................................................................................................................................................................................<<<<........>>>>.......<<<<.<<<<<<.
Upstream sequence (upto 100nt)
CGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGGGCCAAAGAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCATGTTCCACTTGGCTCGG
Downstream sequence (upto 100nt)
CCCCGTATGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAATAAGTGGAACGCATTAG
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCUCUUGCAAUGCGGAAAAAUCCAUGGACCGACCCCAUCGUCUCCA
Intron Sequence
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGTGGTAATGATAGTCTCTTGTACCTGAACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGTCGTCAAGAACGTAGAGGAGGTAGGATGGGTAGTTGGTCAGATCTAGTATGGATCGTACATGGACGATAGTTGGAGTCAGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCCGGGGAAGAGGATCAAGTTGCCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTAGCGAA
Intron Position38-368
Infernal Score18.6
HMM Score30.00
Secondary structure Score-11.40