Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID111228_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDPt.trna1
tRNA locusPt : 8727 - 8857 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderTTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTT isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
GCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTTTAACTTTATTTCTAAAAAGGATTGAATCCTTTTTCTCTCA
tRNA secondary structure
>.>>>.>..>>>>........<<<<.>>>...................................................................<<<.......>>>>>.......<<<<<<.<<<.<.
Upstream sequence (upto 100nt)
GACTCTCCCCACGAAAAACGATTTTGTGATGACCCTATTTTGAGTATCAAAATTCCCCTGTTCGACAAAAGGTATATTTGTATACAATAATCGGATTGTA
Downstream sequence (upto 100nt)
ATGACCAATTCCGGAGAAAATACGCATTCTCGTGATTTGTATCCAAAAGTCGGTTAGACATTGAAAAATTGGATTATGAAATAACGAAACAGAATTATTA
Mature tRNA
GCGGGUAUAGUUUAGUGGUAAAAGUGUGAUUCGUUUUAACUUUAUUUCUAAAAAGGAUUGAAUCCUUUUUCUCUCA
Intron Sequence
ATACCCCTTTATACAGTTAAAGGATCCTTCGGCTTGGTTCGTATGCCGATCAAAA
Intron Position39-93
Infernal Score19.7
HMM Score23.10
Secondary structure Score-3.40