Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110985_PtRNAdb
Plant SourceEutrema salsugineum     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna6
tRNA locuschl : 47011 - 47417 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Eutrema_salsugineum plant by clicking on the isoacceptor]

IsodecoderTAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAA isodecoder in Eutrema_salsugineum plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATGGCGGAATTGGTAGACGCTGCGGACTTAATATCCGTTGACTTTTAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.........................................................................................................................................................................................................................................................................................................................................<<<<<.>>.>>...<<.<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GAAAGAAGATATAAAAAAAATAAAATAAGTATCTATATGTAATGAATTCCAAGGTTTCGGCATAAGAAAAGTGGAAAGACATCATAATGAGATCAAAAAA
Downstream sequence (upto 100nt)
ACTCTACTCCCCCAAAAAGTCCGTTTGACACCTTACCCTTTTTTAGTTATTCAAGAATTCATTATCTTTTGTCATTCATCCTACGCTTTTACAAACTATA
Mature tRNA
GGGGAUAUGGCGGAAUUGGUAGACGCUGCGGACUUAAUAUCCGUUGACUUUUAAAAUCGUGAGGGUUCAAGUCCCUCUAUCCCCA
Intron Sequence
TGGATTGAGCCTTGGTATGGAAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAACAATGGGCAATCCTGAGCCAAATCCTAGTTTACGCGAACAAACCAGAGTTTAGAAAGCGAGAAAAAAAGGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAGTTTACTACTTTGTGTTGATCAAATGATTCACTTCATAGTCTGATAGATCCTCGGTGGAACTTATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACTGACAACAATGAAATTTATAGTAAGATGAAA
Intron Position39-360
Infernal Score44.1
HMM Score17.70
Secondary structure Score26.40