Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110902_PtRNAdb
Plant SourceDioscorea rotundata     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDPt.trna26
tRNA locusPt : 68222 - 68149 (-)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Dioscorea_rotundata plant by clicking on the isoacceptor]

IsodecoderTGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGG isodecoder in Dioscorea_rotundata plant by clicking on the isodecoder]

tRNA Sequence
AGGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAATCCTGTCATCCCTA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAAATTGTATTGTATATTGTATATAGATAGAGGAGAAAATAACGATCTGGAAAATAAAACAAGGATTTTGTACAATGGCCGCTGTACAACAATTTTGAAA
Downstream sequence (upto 100nt)
CCTATTACTACTTCTATTCTATAGGAAGTAAGGAGGGATTAATTTAAATCGATTAAAATTTGATATAATTTTGAATTATTTCATACTATATGTATGCAAG
Mature tRNA
AGGGAUGUAGCGCAGCUUGGUAGCGCGUUUGUUUUGGGUACAAAAUGUCACGGGUUCAAAUCCUGUCAUCCCUA
HMM Score40.90
Secondary structure Score24.70