Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110850_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna8
tRNA locuschl : 51304 - 51473 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GCCGGTATAGCTCAGTTAGTAGAGCAGAGGACTCAAAATCCTCGTATTACCGGTTCAAATCCGCTATTGACA
tRNA secondary structure
>.>>>>...>>>>........<<<<.>>>>>.........................................................................................................<<<<<.....>.>>>.......<<<.<<<<<.<.
Upstream sequence (upto 100nt)
GCCGGTATCGCTCAATTGGTAGAGCAGAGGACTCAAAATCTTCCTGTTACCGGTTCAAATCCGCTATTGAAAATACGTCTAATGTGTCGGAAAGGAAATG
Downstream sequence (upto 100nt)
ATAAGTCTAATGTGTCGGAAAGGAAATGGCCGGTATCGCTCAGTTATCAGTTAGTAGAGCAGGGGACTGAAAATCCTCGTATTACCGGTTCAAATCCTTA
Mature tRNA
GCCGGUAUAGCUCAGUUAGUAGAGCAGAGGACUCAAAAUCCUCGUAUUACCGGUUCAAAUCCGCUAUUGACA
Intron Sequence
ATCTTCCTGTTACCGGTTCAAATCTGCTATGAAAATAAATAAAGATAATGTGTCAGAAATGGCCGGTATCGCTCAGTTAGTACAGCAGAGGACTCAAA
Intron Position38-135
Infernal Score28.3
HMM Score35.60
Secondary structure Score-7.30