Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110750_PtRNAdb
Plant SourceCoffea canephora     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna10
tRNA locuschl : 103886 - 103990 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Coffea_canephora plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Coffea_canephora plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCCCTTGCAAGGCGGTAATGATAGTATCTTGTACCTG
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<.....>.......<<<<.<<<.
Upstream sequence (upto 100nt)
ACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAGGGAAAAGAATAGAAGAAGCATCTGACTACTTCATGCATGCTCCACTCGGCTCG
Downstream sequence (upto 100nt)
AACTGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATAGGCTGTCAAGAACGTAGAGGA
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCCCUUGCAAGGCGGUAAUGAUAGUAUCUUGUACCUG
Intron Sequence
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCC
Intron Position38-77
Infernal Score18.6
HMM Score30.10
Secondary structure Score-11.50