Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110707_PtRNAdb
Plant SourceCitrus sinensis     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna32
tRNA locuschl : 8818 - 8731 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Citrus_sinensis plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Citrus_sinensis plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGAGAGATGGCTGAGTGGATTAAAGCGTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATCCCTCTCTTTCCG
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>...<<<<<<<.>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGAAAGTAAAGATAGAAAATCAAGTAAAGACGGGCTTTTTCAAGCATTATTTTTTGTGTAATGTAACATAGTCATTTTTTTTTTTTTTTATTTTCAATTA
Downstream sequence (upto 100nt)
TTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTTAGCGAACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCCTAAGAACGTTTA
Mature tRNA
GGAGAGAUGGCUGAGUGGAUUAAAGCGUCGGAUUGCUAAUCCGGUGUACGAGUUCUUCGUACCGAGGGUUCGAAUCCCUCUCUUUCCG
HMM Score51.10
Secondary structure Score24.50