Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110452_PtRNAdb
Plant SourceCannabis sativa     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna8
tRNA locuschl : 52157 - 52229 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Cannabis_sativa plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Cannabis_sativa plant by clicking on the isodecoder]

tRNA Sequence
ACCTACTTAACTCAGTGGTTAGAGTATTGCTTTCATACGGCGGGAGTCATTGGTTCAAATCCAATAGTAGGTA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCTTTGATCTCTTTGATTGGTATTGCTTATAAGTAATATTCAATTTATAATCCATCCATGGGATAGGTCCCCTTTTGTTTTTCTTTTGTGAGGATAAAAG
Downstream sequence (upto 100nt)
GAACTTATTAGATAGCAACGTCACTAGTATATAATGAGTTTTTATACTCATTCGCTTTTATTGATTTTGTATATTTTTCATCCTACTCTATTGAATTTTC
Mature tRNA
ACCUACUUAACUCAGUGGUUAGAGUAUUGCUUUCAUACGGCGGGAGUCAUUGGUUCAAAUCCAAUAGUAGGUA
HMM Score35.70
Secondary structure Score23.80