Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110436_PtRNAdb
Plant SourceCannabis sativa     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna26
tRNA locuschl : 52005 - 51914 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Cannabis_sativa plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Cannabis_sativa plant by clicking on the isodecoder]

tRNA Sequence
AGGGCTGTAGCTCAGTTGGTAGAGCACCTCGTTTACACAGAGGAGGTAATCAAAAGATTTGATCTTATTGATCAA
tRNA secondary structure
.>>.>.>..>>>>........<<<<.>>>>..........................<<<<..........>>>>.....<<<<.<.<.<<..
Upstream sequence (upto 100nt)
TATAAATTGAATATTACTTATAAGCAATACCAATCAAAGAGATCAAAGAGCTATCTTGACAAGAAATTATCTACATGATAAAATATGTATCACAAGCATA
Downstream sequence (upto 100nt)
TGGATGTCTTACTCTATGCTTTTGGGGAACAAAAGAAGAGAACAATAGCCTGACAAATGGTTTGGTCCGATTTGGGCGCCTAAACGGATGCCAAAATAGA
Mature tRNA
AGGGCUGUAGCUCAGUUGGUAGAGCACCUCGUUUACACAGAGGAGGUAAUCAAAAGAUUUGAUCUUAUUGAUCAA
Intron Sequence
CGCGCGCCAATGTTTTT
Intron Position38-54
Infernal Score15.7
HMM Score16.70
Secondary structure Score-1.00