Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110375_PtRNAdb
Plant SourceCajanus cajan     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna2
tRNA locuschl : 24885 - 24958 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Cajanus_cajan plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Cajanus_cajan plant by clicking on the isodecoder]

tRNA Sequence
CGCGGAGTAGAGCAACTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCAA
tRNA secondary structure
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
TTACCGTTCTGTATAAATGGTTTATTCTATTTGTACAGATATGGTAGAGGGACCCGTTTAATCTTTTTTTTGTCCATTAGTTATAAATTATTATCCTTAT
Downstream sequence (upto 100nt)
AAACAAGGGTTCAAGAAGAAAAAAAGGGGGGGAGTCAATTCTATACCATTTTGCATACTATGACTATAAAATACATAACTAAGTGGAGGCGGATAGCGGG
Mature tRNA
CGCGGAGUAGAGCAACUUGGUAGCUCGCAAGGCUCAUAACCUUGAGGUCACGGGUUCAAAUCCCGUCUCCGCAA
HMM Score36.80
Secondary structure Score30.80