Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110259_PtRNAdb
Plant SourceBrassica nigra     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna19
tRNA locuschl : 134174 - 134070 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Brassica_nigra plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Brassica_nigra plant by clicking on the isodecoder]

tRNA Sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTTTTGCAAGGCGGTAATGATAGTATCTTGTACCTG
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<.....>.......<<<<.<<<.
Upstream sequence (upto 100nt)
CGGGCGAGGTCTCTGGTTCAAATCCAGGATGGCCCAGCTGCGCCAAGCAAAAGAATATAAGAAGGATCTGACTCCTTCATGCATGCTCCACTTGGCTCGG
Downstream sequence (upto 100nt)
AACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAAAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAGGA
Mature tRNA
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCUUUUGCAAGGCGGUAAUGAUAGUAUCUUGUACCUG
Intron Sequence
ATTGGGTCGTTGCGATTACGGGTTGGGTGTCTAATTGTCC
Intron Position38-77
Infernal Score15.2
HMM Score24.20
Secondary structure Score-9.00