Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID110232_PtRNAdb
Plant SourceBrassica napus     |     Phanerogamae -->Dicot
Genome levelPlastid
tRNA IDchl.trna26
tRNA locuschl : 50644 - 50548 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Brassica_napus plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Brassica_napus plant by clicking on the isodecoder]

tRNA Sequence
AGGGCTATAGCTCAGTTAGGTAGAGCACCTCGTTTACACAGAGGAGTCCATCACGCAATCAAACCAATTGATTGATCTTA
tRNA secondary structure
>>>>.>>..>>>>.........<<<<.>>>>..........................<<<<.>>.....<<...>>>>>.....<<<<<<<.<<<<.
Upstream sequence (upto 100nt)
CAACGAGATGAAAGAGATATAATGTTCGATCATATAATATTAATCTTGACAAGAAATTATCTACATGATAAGATAAGATAAAATGTGGATCATAAACACA
Downstream sequence (upto 100nt)
TTAATAAATCGATGTCTTACTCCATGACTTTTTTTTAGGAAAAAGAGGAGAACAATAGCCTGACATTAGGTCCTATTAAAGTACCCCATTTCGGTAGGGA
Mature tRNA
AGGGCUAUAGCUCAGUUAGGUAGAGCACCUCGUUUACACAGAGGAGUCCAUCACGCAAUCAAACCAAUUGAUUGAUCUUA
Intron Sequence
CGTGCGCCAAAGTTTTT
Intron Position39-55
Infernal Score15.0
HMM Score16.50
Secondary structure Score-1.50