Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID109983_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelPlastid
tRNA IDchl.trna1
tRNA locuschl : 12200 - 12270 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderGCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCC isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGAGCGTAGTTCAATGGTAAAATATCTCCTTGCCAAGGAGAAGATACGGGTTCGATTCCCGCCGCTCGCC
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
AAAAAGGAAAACTCTAATATAATAGAAAATGAAATGAAACGGTCGACCCAGACATAGAAGGTCGACCCAGGCGGATATACGCTATAAAATATATACCGTA
Downstream sequence (upto 100nt)
CGCTTAATTTATCAAAGTACTATGATAAAAAGTTTAGTCTAGTTAACTGTTTAACTACTTATATTAAATTAAGTATTAATTAGGTGTTAGTCTAGTGCCG
Mature tRNA
GCGAGCGUAGUUCAAUGGUAAAAUAUCUCCUUGCCAAGGAGAAGAUACGGGUUCGAUUCCCGCCGCUCGCC
HMM Score41.90
Secondary structure Score14.00