Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID109616_PtRNAdb
Plant SourceZiziphus jujuba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna14
tRNA locuschr-5 : 10866198 - 10866290 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Ziziphus_jujuba plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Ziziphus_jujuba plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGGGAATGCACCTGTTGGCCATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGTGGAGTTGGTGTATATAGATTTTTGGAATTTATTACGGGATTTGTCCTCGTATGGAAAAGATATTATAAATAAAATTAAGTAAAGGAGATTCCAAAAA
Downstream sequence (upto 100nt)
AATTGGTTTTAGTAATTTTTTTTTTTTTTTTTTTTGTCACTTCCCTCAGCTGATCATATATATGTTCCAAATATTTACAGAATGAAACTGTAATATAAAA
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TGGGAATGCACCTGTTGGCC
Intron Position38-57
Infernal Score74.2
HMM Score42.70
Secondary structure Score31.50