Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID108058_PtRNAdb
Plant SourceZea mays     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-1.trna23
tRNA locuschr-1 : 52292640 - 52292719 (+)
IsoacceptorHis

[NOTE: User can view the results of the consensus based study of all the tRNAs of His isoacceptor in Zea_mays plant by clicking on the isoacceptor]

IsodecoderGTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTG isodecoder in Zea_mays plant by clicking on the isodecoder]

tRNA Sequence
GCACAAAGTCCATCTAGCTCAATTGGTAGAGCACAAGGCTGTGAACCCTGTGGTCGTGGGTTCAAGCCCCACGGTTTGCA
tRNA secondary structure
>>>........>>>..>>>>........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
CACAACCCGGACGCGTGGCGTCGACGTGGCAGCGAGCTCGGCGCCAAGATCTGTGGCGCCGAGCTCGGTTATGTTATTAATATATTTGTTGGATACATAA
Downstream sequence (upto 100nt)
TTTAGATTTATTTTTTTGTTTTTATCGCTCGTGTGTCCGTCTAAATTTATTTCTCACCCAGATTTATTTCTCACCATGTGGTCGTGGAGGTCGCTGCCGG
Mature tRNA
GCACAAAGUCCAUCUAGCUCAAUUGGUAGAGCACAAGGCUGUGAACCCUGUGGUCGUGGGUUCAAGCCCCACGGUUUGCA
HMM Score57.40
Secondary structure Score-0.40