Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID107286_PtRNAdb
Plant SourceVitis riparia     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna14
tRNA locuschr-6 : 16035183 - 16035273 (+)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Vitis_riparia plant by clicking on the isoacceptor]

IsodecoderAGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGG isodecoder in Vitis_riparia plant by clicking on the isodecoder]

tRNA Sequence
B-Box
ACTAGGGTAGCCCAATTGGTAAGGGCAAACACTAGGAAGTGTTGTCCCAGTAAGTGACACATGGTTTTGGGTTCGAATCCTACCCCTAATG
tRNA secondary structure
>.>>>>>..>>>>.........<<<<.>>>>..............................<.<<<.>>>>.......<<<<.<<<<<.<.
Upstream sequence (upto 100nt)
GCTGCCTCAAATATGACATATGTTTAGTCCCTAAAACAAAGAGATAATAGAGATATACACAACAAATGCGTCTACACATATTTATGGCTGGGGGGTACCC
Downstream sequence (upto 100nt)
ATACCCTGAATTTACTTGGTGCCGGTTGTTGCGGGGCGGTCAACACCACAAGATTTGGGTCCCTATGGAGAGTCCTAAGGGCTTGGTCATAAAAGGTTCC
Mature tRNA
ACUAGGGUAGCCCAAUUGGUAAGGGCAAACACUAGGAAUGGUUUUGGGUUCGAAUCCUACCCCUAAUG
Intron Sequence
AGTGTTGTCCCAGTAAGTGACAC
Intron Position38-60
Infernal Score22.3
HMM Score16.70
Secondary structure Score5.60