Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID107120_PtRNAdb
Plant SourceVitis riparia     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-19.trna2
tRNA locuschr-19 : 4241477 - 4241569 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Vitis_riparia plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Vitis_riparia plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGGGATTGGCCCGATTAGATATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CACAAAGAAGATGGTTTAAAGTTGAATGAGGAGAGGGTGACGACATTTGGGATATCGGTATTGTAAACTAATAAAGTTCCAAATAACTTGCTTCACATCT
Downstream sequence (upto 100nt)
TGCTTTTTTTCATTGGTCATTTGTAGCAAATCCAACACCCACTTGTGACCCTAACCTCATTTCAATATTTTTGAATTCTTCAACGGTCGAAAAACTGATG
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TGGGATTGGCCCGATTAGAT
Intron Position38-57
Infernal Score74.2
HMM Score42.70
Secondary structure Score31.50