Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID107008_PtRNAdb
Plant SourceVitis riparia     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-14.trna27
tRNA locuschr-14 : 7296345 - 7296273 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Vitis_riparia plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Vitis_riparia plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GATGTTGTGGTGTAGTGGTTATCACGTTAGTCTTACACACTAAAGGTCCCCAGTTCGATCCTGGGCAACATCA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATATATATATATATATATATATATATATATATATATATATACATATTTTATATAAAATGTATATGCATGTATATTAGTATATGATACATTATGTCATCTT
Downstream sequence (upto 100nt)
TTTTCATTATTTATTTTCATGTATAAAATTGAATTTGGTAAGTCTTATTTATATTAGTTGATATCCACATCTTTTGAGTGTACAAAATTGATCTTGGTGC
Mature tRNA
GAUGUUGUGGUGUAGUGGUUAUCACGUUAGUCUUACACACUAAAGGUCCCCAGUUCGAUCCUGGGCAACAUCA
HMM Score41.20
Secondary structure Score35.30