Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID106344_PtRNAdb
Plant SourceVigna unguiculata     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna42
tRNA locuschr-4 : 26330829 - 26330907 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Vigna_unguiculata plant by clicking on the isoacceptor]

IsodecoderTAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAG isodecoder in Vigna_unguiculata plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCGCTATGGTGAAATTGGTAGACACGCTCCTCTTAGGAAGCATGCTAGAGCATCTCGGTTCGAGTCTGAGTAGCGGCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>..................<<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAATTATTTTATTGAATGTTTAGTAAACAAATATTGTGTTTTAATTGATTCTTTCAATTTCGACAATTGATTAAAATTGGGTTATTATGGCTTCGAGTAA
Downstream sequence (upto 100nt)
TCTTATCTTCTAAAAAAAAGTTCCTATAAAGAATTATTATTTCTATTCCAAGTGTTTCTATTTTTTCATTCTATATGGTATTTTTCACTTTAAAGCATAT
Mature tRNA
GUCGCUAUGGUGAAAUUGGUAGACACGCUCCUCUUAGGCUAGAGCAUCUCGGUUCGAGUCUGAGUAGCGGCA
Intron Sequence
AAGCATG
Intron Position39-45
Infernal Score25.6
HMM Score20.30
Secondary structure Score5.30