Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID106129_PtRNAdb
Plant SourceVigna unguiculata     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna83
tRNA locuschr-2 : 20043397 - 20043175 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Vigna_unguiculata plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Vigna_unguiculata plant by clicking on the isodecoder]

tRNA Sequence
GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTATGGTCGTGGGTTTGAGCCCTACGATGGGTG
tRNA secondary structure
>>>>>>>..>>>>........<<<<..>>>>.............................................................................................................................................................<<<<......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTCCCATTTATGAAGCTAAAAGATCGGTCCTTGGGAAGGGGTTGACTTTCCTCAGTCCAATACTTCAAGTCATGTGTTGTACGTTTAGTCATGTATCAA
Downstream sequence (upto 100nt)
TTGCACTTTTCTTCTAAACACAACACTTTTTCCTTCCAACATAGATTTCTTCTGAACACTTTCTACTTCTAATATATATCAGGCCCGTCTAGCTCAGTTG
Mature tRNA
GCCCGUCUAGCUCAGUUGGUAGAGCGCAAGGCUCUUAACCUUAUGGUCGUGGGUUUGAGCCCUACGAUGGGUG
Intron Sequence
ACCTTGTGGTCGTGGGTTATGGTGGGCGTTGCACTGCTTTCCTAAGCAACACTTTTTACTAGTTGACCAAATTTAATTATCCCTAAAATCGTCAAACCTTCATTAATTAAGATATCATTCTCTTTGCTATTTATTAAATCATAGCCCTTA
Intron Position38-187
Infernal Score54.9
HMM Score42.90
Secondary structure Score12.00