Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID106057_PtRNAdb
Plant SourceVigna unguiculata     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna118
tRNA locuschr-2 : 2039837 - 2039753 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Vigna_unguiculata plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Vigna_unguiculata plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTTCTAAGTTATCCTGAGGTCAAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>....................<<<<......>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
AAATTCATTAATTTTACTATAATTAAAATCATACCTAACCTACATTATTTAACATGAAAGTAATTTCCAGGAATGAAGAAACGAACACACATGAGAAATT
Downstream sequence (upto 100nt)
TTAGCTTTTCTTTTTTCTTTAATTTTGACTAACAATGGATTGTGGAGGAAGGATATCTAATGATTGTAGTTTTATCATTGTTGGTGTGTTTAGTTTTCTA
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCAAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTCTAAGTT
Intron Position39-49
Infernal Score58.0
HMM Score38.50
Secondary structure Score19.50