Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID105740_PtRNAdb
Plant SourceVigna unguiculata     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna28
tRNA locuschr-10 : 28529045 - 28529135 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Vigna_unguiculata plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Vigna_unguiculata plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTTGTTGTAATAAATGGAAATCCTTAGGTCGCTGGTTCGAATCGGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACAAATTTAATTAGTTTAAAAGTAAAAGGGAACAAATTCTCCTTTTGAAAATATATTTGTACTGGTATTTATATGTTAGTTTGCTATTTTAAAAGCAAAA
Downstream sequence (upto 100nt)
TTTTTCTATTTTTCAGAACTTAAACAATATCTTTATATACATATATTTAACTGTCTTATGTTTTAGTTTTAATTCATATAAAATTTTTGCTACTTTTAAA
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCGGGCAGGUCGGA
Intron Sequence
TTGTTGTAATAAATGGAA
Intron Position38-55
Infernal Score63.0
HMM Score36.10
Secondary structure Score26.90