Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID105581_PtRNAdb
Plant SourceVigna radiata     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna65
tRNA locuschr-7 : 38988359 - 38988288 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Vigna_radiata plant by clicking on the isoacceptor]

IsodecoderCGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGT isodecoder in Vigna_radiata plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCTCCGTAGCATAGTGGTAGTGCGTTCGCTTCGTAAGCGAAAGGTCGTGAGTTCGATCCTCGCCGGGGGCT
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGACAAATAAATCAATGTGCTTATATTTTATTTGATAAATTTAGACATGTTGCTGTTTTGCAAAAAATAATATAAAATGAGAAATTTCTGATATCGACTA
Downstream sequence (upto 100nt)
TTTCCCTTTAAAATTATTACTTTTGATGTTTTTATGCTTTTTCAATTTTTAATCAAATCAAACACACTTATTTTGAAACTATTTTTATATTTTCAAATTA
Mature tRNA
GCCUCCGUAGCAUAGUGGUAGUGCGUUCGCUUCGUAAGCGAAAGGUCGUGAGUUCGAUCCUCGCCGGGGGCU
HMM Score57.30
Secondary structure Score21.60