Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID105106_PtRNAdb
Plant SourceVigna angularis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna24
tRNA locuschr-5 : 363571 - 363499 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Vigna_angularis plant by clicking on the isoacceptor]

IsodecoderCTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTC isodecoder in Vigna_angularis plant by clicking on the isodecoder]

tRNA Sequence
TCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAAGTCTCGGCAACGGAA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATCCACCCACATCATATCTAACAATTCTACATTCTTACTATCGAAAAGGTTAACGTTAAAAAAGTTAATTATATAAGCAATTTCAGTATAGCATCAGCAA
Downstream sequence (upto 100nt)
TTTTTAAAGGTTTTTTTTTTCTCATTTATCAAGCAGAAAATGGTGAAGTGAAATAATCAATCATGAAGAGAAGAGTGTAAAAAAGATAATAACCAACCGG
Mature tRNA
UCCGUUGUAGUCUAGUUGGUUAGGAUACUCGGCUCUCACCCGAGAGACCCGGGUUCAAGUCUCGGCAACGGAA
HMM Score49.90
Secondary structure Score21.80