Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID104612_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-7.trna379
tRNA locuschr-7 : 567654662 - 567655000 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
GCGTGTGTGGATGAGCGGTGCAATCTCTTTTGGCTTACACCCACAGTGTCAGGGGTTCAAATCCCCCCTCGCACA
tRNA secondary structure
>.>>>.>..>>>..........<<<.>>..>>>...............................................................................................................................................................................................................................................................................<<<.<<.....>>>>.......<<<<.<.<<<.<.
Upstream sequence (upto 100nt)
GTGGATATGTTCCCATGAGGAATTGGTGGTGAATTTGATTTTGGAGATCCAAGCATTCTACTTGAGAGCCTCGCGCACCTTCCAATTTTTTCGCGTGGAC
Downstream sequence (upto 100nt)
CAGCTTCCAAAGGATAACAAAAATATATATCAAAGTTCAGTAATCATCAAACATTGTTGAATTCAAATTCCACTCCTTTCTCATACTACTAGTGAAATAG
Mature tRNA
GCGUGUGUGGAUGAGCGGUGCAAUCUCUUUUGGCUUACACCCACAGUGUCAGGGGUUCAAAUCCCCCCUCGCACA
Intron Sequence
CCCATTAACCCAAGGCGAGTCTCAAAAATGGGTCTTTGCACAGTCTGTGTATTGATGTACCAGATCGACTAATGCTCTGAGGTTGATGTGATGTATTCTCAAACTCTATATCATGTCTCCATAAGCTGATGACCATCACACGAGCAAGCAAACCAATCCCACCTAGTAGGAGTTTTGGCACTAGAGGAAGGCGATGAGTCCGCAAGAAATGATGTCTCGAGGAGGAGTACGCCCGGTCTGTCTTGATTTGCTTCATCCATGATT
Intron Position40-303
Infernal Score21.0
HMM Score11.00
Secondary structure Score10.00