Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID10404_PtRNAdb
Plant SourceArachis monticola     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-A03.trna39
tRNA locuschr-A03 : 115317186 - 115317105 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Arachis_monticola plant by clicking on the isoacceptor]

IsodecoderAGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGA isodecoder in Arachis_monticola plant by clicking on the isodecoder]

tRNA Sequence
GTGGACGTGGCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTTTGCTCGCGCAGATTCGAATTCTGCTGTTCACG
tRNA secondary structure
>>>>>>>...>>>........<<<..>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCATGATGCAAAATAAAGTTTAGTTATGAGAATTGGACAGAGACTATGGTAAGAACTACAAAGATAAATTAAGGCATAACTTTAATAAAATATTAAATAA
Downstream sequence (upto 100nt)
TTTTTTTCCCTCAGGACAGACACATCCACTTGCAATGTATTTTCGCTTTTCCTCCCAATCCCATGAATGACGAAACCAAGACGGAATGCAACAGCATTAG
Mature tRNA
GUGGACGUGGCGGAGUGGUUAUCGGGCAUGACUAGAAAUCAUGUGGGCUUUGCUCGCGCAGAUUCGAAUUCUGCUGUUCACG
HMM Score26.80
Secondary structure Score24.00