Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID103735_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5.trna200
tRNA locuschr-5 : 465133985 - 465134050 (+)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
CTGCTTAGTTGGTAAAGCACAAGGCTGTTAACCTTGTGGACGTGAATTCAAGCCCCATGATGGGGG
tRNA secondary structure
>.>>>>........<<<<.>>>>>.......<<<<<.....>>>...........<<<......<.
Upstream sequence (upto 100nt)
GACTCATCACATGGTAATGAGCCGGCCCTTGGGGGCTACCAATTGCCTCTGTCAACAATTTAAGGTATAAAGCTTTTTATCCATTACATTGAAGGGTCTA
Downstream sequence (upto 100nt)
TTACATCATATGATGTTATTTTTATTGAAGAATATATCAAAGTCCCAGCTCAATATTATCTTACTGAGACGACCCTTGGGGGCTACACGTTGATGATCAA
Mature tRNA
CUGCUUAGUUGGUAAAGCACAAGGCUGUUAACCUUGUGGACGUGAAUUCAAGCCCCAUGAUGGGGG
HMM Score21.30
Secondary structure Score8.20