Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID103251_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna75
tRNA locuschr-3 : 176177205 - 176177279 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
GGGTCCATTGCTCAGTTGGTAAAGCACAAAGCTCTTAACCTTGTGGACGTGGGTTAAAGCCCCATGGTGGAGTTA
tRNA secondary structure
>>.>>>>..>>>..........<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<..<<<<.<<.
Upstream sequence (upto 100nt)
AAGACCCGACTCATCATATCATAATGAGCCAGCCCTTGGGGGCTACCAATTGCTCCTATTAATGATTCAAGGTACACAAGTCTCAATCCATTATATTCAA
Downstream sequence (upto 100nt)
CATCATACGATGTTATTTTCAATGAAGCATGATTATATTTATAAAGTCCCTGCTCATTATTGCATAATGACCCGGCCCTTGGGGGCTACACTGGTTGAAG
Mature tRNA
GGGUCCAUUGCUCAGUUGGUAAAGCACAAAGCUCUUAACCUUGUGGACGUGGGUUAAAGCCCCAUGGUGGAGUUA
HMM Score35.40
Secondary structure Score5.40