Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID103107_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna520
tRNA locuschr-3 : 712605411 - 712605619 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCCGCCTAGCTCAGTTGGAAGAGCTCAAGGTTCTTAGCACATGGTTTGTTTGCTACCTGAGCAAACTTGCCTTTCCTGCAGCCATCCTAGCCCCATGATTTAGGACGAGTGGGCCGGAGATCACTGTTTGGAATGGTAGGACTGCCTAGGTAGCACACCATAGAGGCTCATTACCTTGTGGTCTTGGGTTCGAGCCCCAAGGCGGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...............................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTAGGTTGTTCAACATTTATGGTAATATGGGTGAACCTAAGGGATTGATTATATCTTCCTTTTAATTATATAATAGATAGATTGTCAAAAAGATCACATT
Downstream sequence (upto 100nt)
ATTTCTTTTTGGTGCTTCCACATATTTATTTTCTTTCTGGATTTGTACCCTTTTTTGACCAATTATTTTAGGTATTTGGGATAACTTAGAGTTATGTATT
Mature tRNA
GCCCGCCUAGCUCAGUUGGAAGAGCUCAAGGUUCUUAACCUUGUGGUCUUGGGUUCGAGCCCCAAGGCGGGCA
Intron Sequence
GCACATGGTTTGTTTGCTACCTGAGCAAACTTGCCTTTCCTGCAGCCATCCTAGCCCCATGATTTAGGACGAGTGGGCCGGAGATCACTGTTTGGAATGGTAGGACTGCCTAGGTAGCACACCATAGAGGCTCATT
Intron Position38-173
Infernal Score67.2
HMM Score39.00
Secondary structure Score28.20