Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID103101_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna513
tRNA locuschr-3 : 712149714 - 712149923 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCCGCCTAGCTCAGTTGGTAGAGCCAAGGCTCTTAGGATGTGCTTGGTCTGCTACCCGCACAGATCCTTCTGGCTCTGGTAGCAATCCCAACAGTACGATTTGGTATACGTGGGGCTGGGATTGCTACCGATTCCAGAAGGATTTGCACAAATAGCAAACCATACATGCCATAACCTTGTGGTCTTGGGTTCGAGTCCTAAGGCGGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<>>>>>.................................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGTAGATTATTTTACTTATGTGGAAATATAGATGAACCCGACGACTTGATTTCCTGTTGTTTATCTTATATAATAAATATATTGTAAATTTTAACACATA
Downstream sequence (upto 100nt)
AATTTTTTGGGAAAAGGTTTATTATCAACTGGATGAAAACAAGAGAACATAAGACTCTCACGTGTCCCTGTGGACCCGTCATGTTTCATCCAACCCTATC
Mature tRNA
GCCCGCCUAGCUCAGUUGGUAGAGCCAAGGCUCUUAACCUUGUGGUCUUGGGUUCGAGUCCUAAGGCGGGCA
Intron Sequence
GGATGTGCTTGGTCTGCTACCCGCACAGATCCTTCTGGCTCTGGTAGCAATCCCAACAGTACGATTTGGTATACGTGGGGCTGGGATTGCTACCGATTCCAGAAGGATTTGCACAAATAGCAAACCATACATGCCATA
Intron Position37-174
Infernal Score54.4
HMM Score32.40
Secondary structure Score22.00