Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID103031_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna428
tRNA locuschr-3 : 674897382 - 674897324 (-)
IsoacceptorSup

[NOTE: User can view the results of the consensus based study of all the tRNAs of Sup isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderCTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTA isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
TGCTCAGTTGGTAAAGCACAAAGCTCTAAACCTTGTGGACGTGGGTTCAAGCCCCATAA
tRNA secondary structure
>>>>..........<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<.
Upstream sequence (upto 100nt)
ACTCATCACATCATAATGAGCCGGCTCTTGGGGGCTACCAATTGCTCCTGTCAACAATTCAAGGTACACAAGTTTTATTCCATTATATTGAAGGGTCCAC
Downstream sequence (upto 100nt)
TGGGGGTTACATCATATGATGTTCTTTTCAAAAGAAGTATATATAAAGTCCCAGCTCAATATTATCTTACTGAGCCGGCCCTTGGGGGCTACACATTGTT
Mature tRNA
UGCUCAGUUGGUAAAGCACAAAGCUCUAAACCUUGUGGACGUGGGUUCAAGCCCCAUAA
HMM Score15.90
Secondary structure Score21.00