Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID1028_PtRNAdb
Plant SourceActinidia eriantha     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-XXIX.trna16
tRNA locuschr-XXIX : 19210805 - 19210878 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Actinidia_eriantha plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Actinidia_eriantha plant by clicking on the isodecoder]

tRNA Sequence
TGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACGCAT
tRNA secondary structure
>>>>..>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<.
Upstream sequence (upto 100nt)
AATTTTTAAATTAAAATTAATTAATCAACAAAGCAAATGTAGAAGTATGAATTGGAAAATAATACTATAAGATTAATTTAATAATAGCTTTTGACACAAA
Downstream sequence (upto 100nt)
TATCTATTTTTACGTCCCGTTCAAAATCAGTTTGTGCCCTACATATTGACCGTTATCACATTGGCCCTTACAGCCCGTCTGGCCGATAATAGTCCCCTGA
Mature tRNA
UGCGGGGAUAGCUCAGUUGGGAGAGCGUCAGACUGAAGAUCUGAAGGUCGCGUGUUCGAUCCACGCUCACGCAU
HMM Score55.60
Secondary structure Score14.10