Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID102681_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna529
tRNA locuschr-2 : 141382742 - 141382672 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TCCACTACTCAGTTGGAAGAGTACAAAGATCTTAACCTTATGGACATGGGTTCGAGCCCCATGGAGAGGAT
tRNA secondary structure
>>>.>>>>>>........<<<<..>>.>.......<.<<......>>>>>.......<<<<<..<<.<<<.
Upstream sequence (upto 100nt)
CTCGACTCATCACATTGTAATAAGCCGGCCCTTGGGGGCTACCAATTGCTCCTGTCAACAATTCAAGGTACACAAGTCTTAAATCCATTATATTGAAGGG
Downstream sequence (upto 100nt)
TACAGCATATGATATTCTTTTCAAGGAAATATATATAAAGTCCCAGCTCAATATTATTTTACTGAGCCGGCCCTTGGGGCTACATGTTGCTGCTCAAGTC
Mature tRNA
UCCACUACUCAGUUGGAAGAGUACAAAGAUCUUAACCUUAUGGACAUGGGUUCGAGCCCCAUGGAGAGGAU
HMM Score12.80
Secondary structure Score13.40