Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID102531_PtRNAdb
Plant SourceTriticum urartu     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna334
tRNA locuschr-2 : 734942009 - 734941936 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Triticum_urartu plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Triticum_urartu plant by clicking on the isodecoder]

tRNA Sequence
GGGGATGTAGCTCAATTGGTAGGGTGCTAATCAATGAATAGAGGCATGGGGTTTGATTCCTCGCATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>............<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GCCCATGCTTATGATACACTATTGGGCCCATGTTTGATTCTTGTCCTAAACTTCGGATTAATTTTATTAATTGCCACAGTTAATAGTAATACACATAAAT
Downstream sequence (upto 100nt)
CTTATCTTTTCATTATTTTTTCTGCCGGCCGACTTCTTCCTTTTCCTGTAAAATAAATTTGACCGGGAAAAAAGAGAGAAGAAATCTTTCCTGGCTGCTT
Mature tRNA
GGGGAUGUAGCUCAAUUGGUAGGGUGCUAAUCAAUGAAUAGAGGCAUGGGGUUUGAUUCCUCGCAUCUCCA
Intron Sequence
TGA
Intron Position38-40
Infernal Score23.6
HMM Score17.80
Secondary structure Score5.80