Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID101091_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-7.trna580
tRNA locuschr-7 : 179554247 - 179554179 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
TCCACTGCTTAGTTGGTAAGGCACAAAGCTCTTAACCTTATGGCCGTGGGTTCAAGCCCCATGGTGGAG
tRNA secondary structure
>>>>>>>>>>........<<<<..>>.>.......<.<<......>>>>>.......<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCCCGACTCATCACATTGTAATGAGCCGGCCCTTGGGGGCTACCAATTGCTCCTATCAATGATTCAAGGTACACAAGTCTTAAACCATTATATTCAAAGG
Downstream sequence (upto 100nt)
ATTACATCATATGATATTCTTTTCAATGAAGTATATATCAAGTCTCAGCTCAATATTATCTTATTGAGCCGGCCCTTGGGGGCTACATGTTGTTGTTCCA
Mature tRNA
UCCACUGCUUAGUUGGUAAGGCACAAAGCUCUUAACCUUAUGGCCGUGGGUUCAAGCCCCAUGGUGGAG
HMM Score25.10
Secondary structure Score8.60