Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID100441_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-6.trna554
tRNA locuschr-6 : 740300411 - 740300340 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
GGGATGTAGCTCAAATGGTAGAGCGCCCGCTTTGCATGCGGGAGGCACGGGGTTCGCTCCCCCGCATCTCCA
tRNA secondary structure
>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<.
Upstream sequence (upto 100nt)
TACGAAAATCTTTATCGGTCAAACCGCATAACAACATTTGTGATTAAGGGATTGATTTGATGGTGATTAAGACTAAGAAGTGGTTTGTGTCAACAATGAT
Downstream sequence (upto 100nt)
TTTTTCTCTTTTTTCTATCTGTTTTTTTATCTCTTGAGTGGATCTGTCAGCCTATTCCTCACCGGATCCGTGCTAGTGTCCACGCTTGGTGGATTCCTTT
Mature tRNA
GGGAUGUAGCUCAAAUGGUAGAGCGCCCGCUUUGCAUGCGGGAGGCACGGGGUUCGCUCCCCCGCAUCUCCA
HMM Score28.10
Secondary structure Score23.00