This page shows the results for a single plant selected by the user in PtRNAdb browse module. Users can further filter the results by entering keywords in the search bar on the top right corner of the output table. For further information about each entry user can click on the PtRNAdb ID. To download the results click:
PtRNAdb ID | Plant Name | Clade | tRNA Name | tRNA Locus | tRNA Type | Anticodon | tRNA length | Infernal Score | Secondary structure score | HMM Score | Isotype Score |
---|---|---|---|---|---|---|---|---|---|---|---|
60342_PtRNAdb | Morella_rubra | Dicot | chr-2.trna1-Gln-TTG | chr-2 : 213430 - 213359 (-) | Gln | TTG | 72 | 28.6 | 17.80 | 10.80 | 26.1 |
60343_PtRNAdb | Morella_rubra | Dicot | chr-5.trna1-Pro-TGG | chr-5 : 574637 - 574709 (+) | Pro | TGG | 73 | 46.7 | 22.30 | 24.40 | 51.7 |
60344_PtRNAdb | Morella_rubra | Dicot | chr-6.trna1-Met-CAT | chr-6 : 124223 - 124308 (+) | Met | CAT | 74 | 64.2 | 23.40 | 40.80 | 104.0 |
60345_PtRNAdb | Morella_rubra | Dicot | chr-6.trna2-Trp-CCA | chr-6 : 175452 - 175523 (+) | Trp | CCA | 72 | 75.8 | 24.60 | 51.20 | 105.6 |
60346_PtRNAdb | Morella_rubra | Dicot | chr-6.trna3-Trp-CCA | chr-6 : 200079 - 200008 (-) | Trp | CCA | 72 | 75.8 | 24.60 | 51.20 | 105.6 |
111448_PtRNAdb | Morella_rubra | Dicot | chl.trna10-Arg-ACG | chl : 112635 - 112708 (+) | Arg | ACG | 74 | 57.7 | 16.40 | 41.30 | n/a |
111449_PtRNAdb | Morella_rubra | Dicot | chl.trna11-Leu-TAG | chl : 119349 - 119428 (+) | Leu | TAG | 80 | 63.2 | 35.20 | 28.00 | n/a |
111450_PtRNAdb | Morella_rubra | Dicot | chl.trna12-Asn-GTT | chl : 134995 - 135066 (+) | Asn | GTT | 72 | 68.2 | 23.50 | 44.70 | n/a |
111451_PtRNAdb | Morella_rubra | Dicot | chl.trna13-Leu-CAA | chl : 149776 - 149856 (+) | Leu | CAA | 81 | 62.3 | 27.90 | 34.40 | n/a |
111452_PtRNAdb | Morella_rubra | Dicot | chl.trna14-Met-CAT | chl : 157465 - 157538 (+) | Met | CAT | 74 | 70.4 | 26.80 | 43.60 | n/a |
111453_PtRNAdb | Morella_rubra | Dicot | chl.trna15-Val-GAC | chl : 143573 - 143502 (-) | Val | GAC | 72 | 58.9 | 30.30 | 28.60 | n/a |
111454_PtRNAdb | Morella_rubra | Dicot | chl.trna16-Ile-GAT | chl : 141490 - 141403 (-) | Ile | GAT | 72 | 16.4 | 16.40 | 0.00 | n/a |
111455_PtRNAdb | Morella_rubra | Dicot | chl.trna17-Arg-ACG | chl : 135724 - 135651 (-) | Arg | ACG | 74 | 57.7 | 16.40 | 41.30 | n/a |
111456_PtRNAdb | Morella_rubra | Dicot | chl.trna18-Asn-GTT | chl : 113364 - 113293 (-) | Asn | GTT | 72 | 68.2 | 23.50 | 44.70 | n/a |
111457_PtRNAdb | Morella_rubra | Dicot | chl.trna19-Leu-CAA | chl : 98583 - 98503 (-) | Leu | CAA | 81 | 62.3 | 27.90 | 34.40 | n/a |
111458_PtRNAdb | Morella_rubra | Dicot | chl.trna1-Arg-TCT | chl : 11273 - 11344 (+) | Arg | TCT | 72 | 66.5 | 28.50 | 38.00 | n/a |
111459_PtRNAdb | Morella_rubra | Dicot | chl.trna20-Met-CAT | chl : 90894 - 90821 (-) | Met | CAT | 74 | 70.4 | 26.80 | 43.60 | n/a |
111460_PtRNAdb | Morella_rubra | Dicot | chl.trna21-Pro-TGG | chl : 70800 - 70727 (-) | Pro | TGG | 74 | 65.6 | 24.70 | 40.90 | n/a |
111461_PtRNAdb | Morella_rubra | Dicot | chl.trna22-Trp-CCA | chl : 70610 - 70537 (-) | Trp | CCA | 74 | 68.7 | 25.80 | 42.90 | n/a |
111462_PtRNAdb | Morella_rubra | Dicot | chl.trna23-Thr-TGT | chl : 50376 - 50304 (-) | Thr | TGT | 73 | 70.9 | 22.70 | 48.20 | n/a |
111463_PtRNAdb | Morella_rubra | Dicot | chl.trna24-Met-CAT | chl : 40215 - 40142 (-) | Met | CAT | 74 | 68.4 | 28.40 | 40.00 | n/a |
111464_PtRNAdb | Morella_rubra | Dicot | chl.trna25-Ser-TGA | chl : 38656 - 38564 (-) | Ser | TGA | 93 | 70.8 | 21.50 | 49.30 | n/a |
111465_PtRNAdb | Morella_rubra | Dicot | chl.trna26-Glu-TTC | chl : 33515 - 33443 (-) | Glu | TTC | 73 | 53.6 | 22.30 | 31.30 | n/a |
111466_PtRNAdb | Morella_rubra | Dicot | chl.trna27-Tyr-GTA | chl : 33383 - 33300 (-) | Tyr | GTA | 84 | 62.3 | 21.70 | 40.60 | n/a |
111467_PtRNAdb | Morella_rubra | Dicot | chl.trna28-Asp-GTC | chl : 32824 - 32751 (-) | Asp | GTC | 74 | 67.0 | 17.50 | 49.50 | n/a |
111468_PtRNAdb | Morella_rubra | Dicot | chl.trna29-Ser-GCT | chl : 9335 - 9248 (-) | Ser | GCT | 88 | 66.5 | 15.10 | 51.40 | n/a |
111469_PtRNAdb | Morella_rubra | Dicot | chl.trna2-Cys-GCA | chl : 29914 - 29984 (+) | Cys | GCA | 71 | 67.4 | 29.20 | 38.20 | n/a |
111470_PtRNAdb | Morella_rubra | Dicot | chl.trna30-Gln-TTG | chl : 8019 - 7948 (-) | Gln | TTG | 72 | 56.7 | 16.20 | 40.50 | n/a |
111471_PtRNAdb | Morella_rubra | Dicot | chl.trna31-His-GTG | chl : 104 - 31 (-) | His | GTG | 74 | 63.7 | 17.30 | 46.40 | n/a |
111472_PtRNAdb | Morella_rubra | Dicot | chl.trna3-Thr-GGT | chl : 34305 - 34376 (+) | Thr | GGT | 72 | 66.7 | 26.80 | 39.90 | n/a |
111473_PtRNAdb | Morella_rubra | Dicot | chl.trna4-Gly-GCC | chl : 39895 - 39965 (+) | Gly | GCC | 71 | 68.1 | 24.10 | 44.00 | n/a |
111474_PtRNAdb | Morella_rubra | Dicot | chl.trna5-Ser-GGA | chl : 48957 - 49043 (+) | Ser | GGA | 87 | 73.6 | 26.60 | 47.00 | n/a |
111475_PtRNAdb | Morella_rubra | Dicot | chl.trna6-Phe-GAA | chl : 52237 - 52309 (+) | Phe | GAA | 73 | 67.1 | 22.60 | 44.50 | n/a |
111476_PtRNAdb | Morella_rubra | Dicot | chl.trna7-Met-CAT | chl : 56257 - 56329 (+) | Met | CAT | 73 | 59.5 | 23.80 | 35.70 | n/a |
111477_PtRNAdb | Morella_rubra | Dicot | chl.trna8-Val-GAC | chl : 104786 - 104857 (+) | Val | GAC | 72 | 58.9 | 30.30 | 28.60 | n/a |
111478_PtRNAdb | Morella_rubra | Dicot | chl.trna9-Ile-GAT | chl : 106869 - 106956 (+) | Ile | GAT | 72 | 16.4 | 16.40 | 0.00 | n/a |
© Developed by Dr. Shailesh Laboratory | National Institute of Plant Genome Research (NIPGR), New Delhi, India | DBT