Alignment based on Smith-Waterman Algorithm

This page is designed to facilitate the user to align their sequences to vsiRNAs available in PVsiRNAdb or virus genomes. User can align only nucleotide sequences. Only best 10 alignment results will be displayed and rest all alignments can be downloaded. For more information see HELP page.

Type/paste query sequences in FASTA format:
    

or Upload your sequence  

Select Either of the option
   Reference Genome of Virus(s)
   siRNAs of PVsiRNAdb
Gap opening penalty                    Gap extension penalty   
                 

Dr. Shailesh Kumar                 SK Lab                 NIPGR                  DBT                  © 2018 Shailesh Lab.